Stem-loop bna-MIR169d

Accession

MI0006460

Description

Brassica napus bna-MIR169d precursor miRNA

Gene family

MIPF0000012; MIR169_1

Literature search

11 open access papers mention bna-MIR169d
(45 sentences)

Sequence

gaaggagaugucaaagaugaauaggagauuucuauuuggUAGCCAAGGAUGACUUGCCUAcuucuuugcgaaggaaaauggucacggugucauguuugaaagugaauauacauuuuuaagaguauaucaauuagugaccauuuugcguauaaaaagauauuaggcagucuccuuggcuauccuuauauguucuucuuucucaucucagacauuuaccuuc
((((((((((((..((((((..((((((....(((..((((((((((((.((((.(((((..(((((.....(.((((((((((((((((.((.((((((((((......)))))))))).))))))).....))))))))))).)......)))))...))))))))))))))))))).))..)))...))))))...))))))..))))))).)))))

Structure

     -       aa      -au      uuuc   uu  -          U    U     -cu     -gcgaa g           -----     c  g          aa 
gaagg agauguc  agauga   aggaga    uau  gg UAGCCAAGGA GACU GCCUA   ucuuu      g aaaauggucac     ggugu au uuugaaagug  u
||||| |||||||  ||||||   ||||||    |||  || |||||||||| |||| |||||   |||||      | |||||||||||     ||||| || ||||||||||   
cuucc uuuacag  ucuacu   ucuucu    aua  cc aucgguuccu cuga cggau   agaaa      c uuuuaccagug     cuaua ug gaauuuuuac  a
     a       ac      cuu      -ugu   uu  u          -    -     uau     aauaug g           auuaa     -  a          au 

Annotation confidence Not enough data

Genome context

EM:BZ014943: 255-474 [-]

Mature bna-miR169d

• Accession: MIMAT0005615
• Description: Brassica napus bna-miR169d mature miRNA
• Sequence: 40 - UAGCCAAGGAUGACUUGCCUA - 60
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 17659282
   Cloning and characterization of microRNAs from Brassica napus
   "Wang L, Wang MB, Tu JX, Helliwell CA, Waterhouse PM, Dennis ES, Fu TD, Fan YL"
   "FEBS Lett (2007) 581:3848-3856