miRBase entry: vvi-MIR156b

Stem-loop vvi-MIR156b


Accession
MI0006486
Description
Vitis vinifera vvi-MIR156b precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
11 open access papers mention vvi-MIR156b
(96 sentences)

Sequence

395127 reads, 26501 reads per million, 2 experiments
cauugaaaacUGACAGAAGAGAGUGAGCACacagaggcaauuguauaaguuuaugcuuuugcuuuugcgugcucauuucucuuucugucagcuuccagugcc
(((((.((.(((((((((((((((((((((.(((((((((..(((((....)))))..))))))))).))))))).))))).))))))))).)).)))))..

Structure
--     a  a         -     -       a         uu     a 
  cauug aa cUGACAGAA GAGAG UGAGCAC cagaggcaa  guaua g
  ||||| || ||||||||| ||||| ||||||| |||||||||  |||||  
  gugac uu gacugucuu cucuu acucgug guuuucguu  cguau u
cc     c  c         u     u       c         uu     u 


Annotation confidence Not enough data
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Genome context
chr4: 5356999-5357100 [-]

Database links

Mature vvi-miR156b

Accession MIMAT0005641
Description Vitis vinifera vvi-miR156b mature miRNA
Sequence 11 - UGACAGAAGAGAGUGAGCAC - 30
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558