miRBase entry: vvi-MIR156e

Stem-loop vvi-MIR156e


Accession
MI0006489
Description
Vitis vinifera vvi-MIR156e precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
11 open access papers mention vvi-MIR156e
(94 sentences)

Sequence

71 reads, 5 reads per million, 2 experiments
guaugguaggUGACAGAGGAGAGUGAGCACucaugguucuuuucuugcaugaaguuucuaugcuugaagcucugugugcuuacucccuaucugucaccccucaagcau
((.(((..(((((((((((.((((((((((.((.(((....(((..((((((....)).))))..)))))).)).))))))))))))..)))))))))..))).))..

Structure
--  a   ua         --  A          u  u   ucuu   uu    -  a 
  gu ugg  ggUGACAGA  GG GAGUGAGCAC ca ggu    uuc  gcau ga g
  || |||  |||||||||  || |||||||||| || |||    |||  |||| ||  
  cg acu  ccacugucu  cc cucauucgug gu ucg    aag  cgua cu u
ua  a   cc         au  -          u  c   ----   uu    u  u 


Annotation confidence Not enough data
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Genome context
chr11: 1504194-1504301 [-]

Database links

Mature vvi-miR156e

Accession MIMAT0005644
Description Vitis vinifera vvi-miR156e mature miRNA
Sequence 11 - UGACAGAGGAGAGUGAGCAC - 30
Evidence not_experimental

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467