Stem-loop vvi-MIR156e

Accession

MI0006489

Description

Vitis vinifera vvi-MIR156e precursor miRNA

Literature search

11 open access papers mention vvi-MIR156e
(93 sentences)

Sequence

767 reads, 12.0 reads per million, 116 experiments

guaugguaggUGACAGAGGAGAGUGAGCACucaugguucuuuucuugcaugaaguuucuaugcuugaagcucuguguGCUUACUCCCUAUCUGUCACCccucaagcau
((.(((..(((((((((((.((((((((((.((.(((....(((..((((((....)).))))..)))))).)).))))))))))))..)))))))))..))).))..

Structure

--  a   ua         --  A          u  u   ucuu   uu    -  a 
  gu ugg  ggUGACAGA  GG GAGUGAGCAC ca ggu    uuc  gcau ga g
  || |||  |||||||||  || |||||||||| || |||    |||  |||| ||  
  cg acu  CCACUGUCU  CC CUCAUUCGug gu ucg    aag  cgua cu u
ua  a   cc         AU  -          u  c   ----   uu    u  u 

Annotation confidence High

Genome context

gb|CP126658.1|: 1503060-1503167 [-]

Mature vvi-miR156e-5p

• Accession: MIMAT0005644
• Description: Vitis vinifera vvi-miR156e-5p mature miRNA
• Sequence: 11 - UGACAGAGGAGAGUGAGCAC - 30
• Evidence: not_experimental

Mature vvi-miR156e-3p

• Accession: MIMAT0055781
• Description: Vitis vinifera vvi-miR156e-3p mature miRNA
• Sequence: 78 - GCUUACUCCCUAUCUGUCACC - 98
• Evidence: experimental ; unknown

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467