miRBase entry: vvi-MIR160e

Stem-loop vvi-MIR160e


Accession
MI0006501
Description
Vitis vinifera vvi-MIR160e precursor miRNA
Gene family
MIPF0000032; MIR160

Literature search
4 open access papers mention vvi-MIR160e
(23 sentences)

Sequence

1347 reads, 92 reads per million, 2 experiments
uaagcauauaUGCCUGGCUCCCUGUAUGCCAuuugcagagcccaccggcacaucgauggccuucguggauggcguaugaggagccaugcauaugccccaucu
...(((((..(((.(((((((.((((((((((((((.(((.(((.((......)).))).))).)))))))))))))).))))))).)))))))).......

Structure
----uaa     ua   C       C              a   c   c  gc 
       gcaua  UGC UGGCUCC UGUAUGCCAuuugc gag cca cg  a
       |||||  ||| ||||||| |||||||||||||| ||| ||| ||   
       cguau  acg accgagg guaugcgguaggug uuc ggu gc  c
ucuaccc     --   u       a              c   c   a  ua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature vvi-miR160e

Accession MIMAT0005656
Description Vitis vinifera vvi-miR160e mature miRNA
Sequence 11 - UGCCUGGCUCCCUGUAUGCCA - 31
Evidence experimental
Array [2], Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558