miRBase entry: vvi-MIR164d

Stem-loop vvi-MIR164d


Accession
MI0006506
Description
Vitis vinifera vvi-MIR164d precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
4 open access papers mention vvi-MIR164d
(14 sentences)

Sequence

102054 reads, 6786 reads per million, 2 experiments
aagcucuugaUGGAGAAGCAGGGCACGUGCAguucacaaauucuaaucugcucugcacgugcaguucacaaauucuaaucugcucugcacgugcuccccuucuccaacauggguuccu
.(((((.((.((((((((..((((((((((((..((............((..((((....))))..))............))..))))))))))))..)))))))).)).)))))...

Structure
--a     u  a        CA            uu  caaauucuaauc  cu    a 
   agcuc ug UGGAGAAG  GGGCACGUGCAg  ca            ug  cugc c
   ||||| || ||||||||  ||||||||||||  ||            ||  ||||  
   uuggg ac accucuuc  cucgugcacguc  gu            ac  gacg g
ucc     u  a        cc            uc  cuaaucuuaaac  uu    u 


Annotation confidence Not enough data
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Genome context
chr14: 1414565-1414682 [-]

Database links

Mature vvi-miR164d

Accession MIMAT0005661
Description Vitis vinifera vvi-miR164d mature miRNA
Sequence 11 - UGGAGAAGCAGGGCACGUGCA - 31
Evidence experimental
Array [2], Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558