miRBase entry: vvi-MIR166f

Stem-loop vvi-MIR166f


Accession
MI0006512
Description
Vitis vinifera vvi-MIR166f precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
8 open access papers mention vvi-MIR166f
(15 sentences)

Sequence

2213487 reads, 148420 reads per million, 2 experiments
uguaguuguggggaauguuggcuggcucgaggcuuucuugagugauuuuauguauaccucaaaaagcuUCGGACCAGGCUUCAUUCCCCucaacacacuu
(((.((((.((((((((..(.((((.((((((((((.(((((..((.......))..))))))))))))))).)))).)..)))))))).)))))))...

Structure
---   a    u        uu g    c          c     ug  uu 
   ugu guug ggggaaug  g cugg ucgaggcuuu uugag  au  u
   ||| |||| ||||||||  | |||| |||||||||| |||||  ||  a
   aca caac CCCCUUAC  C GACC GGCUucgaaa aacuc  ua  u
uuc   -    u        UU G    A          -     ca  ug 


Annotation confidence Not enough data
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Genome context
chr7: 19450014-19450113 [+]

Database links

Mature vvi-miR166f

Accession MIMAT0005667
Description Vitis vinifera vvi-miR166f mature miRNA
Sequence 69 - UCGGACCAGGCUUCAUUCCCC - 89
Evidence experimental
Array [2], Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558