Stem-loop vvi-MIR168

Accession

MI0006520

Description

Vitis vinifera vvi-MIR168 precursor miRNA

Gene family

MIPF0000081; MIR168

Literature search

5 open access papers mention vvi-MIR168
(35 sentences)

Sequence

225882 reads, 15147 reads per million, 2 experiments

ggucucuaauUCGCUUGGUGCAGGUCGGGAAccgacuucgccgcuccggcagcgccggaggcacgcggcggccuacgauugguugcugagcgaauuccgaucccgccuugcaucaacugaaucggagacggc
.((((((.(((((.((((((((((.(((((.(.((.(((((..(((((((...))))))).....((((((((.......)))))))).))))).)).).))))).)))))))))).))))).))))))...

Structure

--g      a     C          U     A c  c     cgcuccggcagcgccggaggcacg        ua 
   gucucu auUCG UUGGUGCAGG CGGGA c ga uucgc                        cggcggcc  c
   |||||| ||||| |||||||||| ||||| | || |||||                        ||||||||  g
   cagagg uaagu aacuacguuc gcccu g cu aagcg                        gucguugg  a
cgg      c     c          c     a c  u     -----------------------a        uu 

Annotation confidence Not enough data

Genome context

chr2: 17944801-17944932 [-]

Mature vvi-miR168

• Accession: MIMAT0005675
• Description: Vitis vinifera vvi-miR168 mature miRNA
• Sequence: 11 - UCGCUUGGUGCAGGUCGGGAA - 31
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558