Stem-loop vvi-MIR169d

Accession

MI0006524

Description

Vitis vinifera vvi-MIR169d precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

8 open access papers mention vvi-MIR169d
(15 sentences)

Sequence

8997 reads, 604 reads per million, 2 experiments

gaguggaaugCAGCCAAGAAUGAUUUGCCGGaauuuauauauagugagaagagaagaggcuauaggcuuucacauauauagugaacccuggcaaguuguccuuggcuacauuugauucuc
((((.(((((.(((((((.((((((((((((..(((((((((((((((.........((((...))))))))).))))).)))))..)))))))))))).))))))).))))).))))..

Structure

--    g     C       A            aa     -     -     aagagaaga    a 
  gagu gaaug AGCCAAG AUGAUUUGCCGG  uuuau auaua gugag         ggcu  
  |||| ||||| ||||||| ||||||||||||  ||||| ||||| |||||         |||| u
  cuua uuuac ucgguuc uguugaacgguc  aagug uauau cacuu         ucgg  
cu    g     a       c            cc     a     a     ---------    a 

Annotation confidence Not enough data

Genome context

chr11: 16106486-16106605 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from vvi-MIR169d

Mature vvi-miR169d

• Accession: MIMAT0005679
• Description: Vitis vinifera vvi-miR169d mature miRNA
• Sequence: 11 - CAGCCAAGAAUGAUUUGCCGG - 31
• Evidence: not_experimental

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467