miRBase entry: vvi-MIR169e

Stem-loop vvi-MIR169e


Accession
MI0006525
Description
Vitis vinifera vvi-MIR169e precursor miRNA
Gene family
MIPF0000012; MIR169_1

Literature search
8 open access papers mention vvi-MIR169e
(17 sentences)

Sequence

485 reads, 33 reads per million, 2 experiments
gucuugucugaUAGCCAAGGAUGACUUGCCUGCccuaucccaagugggucaauuucuuucuuuuuuccaaguaguguuugauauuugauauaucaugaauccgguuguuuggguuccaggcagucaccuuggcuaauuuuacaggcucu
((((.((..(((((((((((.(((((.(((((.(((((.....)))))..............................((((((.....)))))).((((((((....)))))))))))))))))))))))))).)))..))))))...

Structure
---    u  cu   -        A     U     Cccuaucccaagugggucaauuucuuucuuuuuuccaaguaguguuugauauuugauauaucau        u 
   gucu gu  gaU AGCCAAGG UGACU GCCUG                                                                gaauccgg u
   |||| ||  ||| |||||||| ||||| |||||                                                                ||||||||  
   cgga ca  uua ucgguucc acuga cggac                                                                cuuggguu g
ucu    -  uu   a        -     -     ----------------------------------------------------------------        u 


Annotation confidence High
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Genome context
chr14: 25082717-25082865 [-]

Database links

Mature vvi-miR169e

Accession MIMAT0005680
Description Vitis vinifera vvi-miR169e mature miRNA
Sequence 12 - UAGCCAAGGAUGACUUGCCUGC - 33
Evidence experimental
Array [2], Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558