miRBase entry: vvi-MIR172a

Stem-loop vvi-MIR172a


Accession
MI0006544
Description
Vitis vinifera vvi-MIR172a precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
9 open access papers mention vvi-MIR172a
(37 sentences)

Sequence

1835 reads, 0 reads per million, 2 experiments
uauugccgaugcagcaucaucaagauucucauccuugaaaaguuuggcagagauaacaucaccaccgugcauuugcaugUGAAUCUUGAUGAUGCUACAUgcgcaaacaa
..((((..(((.(((((((((((((((((((....)))......(((..((.......)).))).(((((....))))).)))))))))))))))).)))..))))....

Structure
--ua    cg   c                ucauccuugaaaaguu   ca  ga 
    uugc  aug agcaucaucaagauuc                ugg  ga  u
    ||||  ||| ||||||||||||||||                |||  ||  a
    aacg  UAC UCGUAGUAGUUCUAAG                acc  cu  a
aaca    cg   A                Uguacguuuacgugcc   -a  ac 


Annotation confidence Not enough data
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Genome context
chr6: 17652412-17652521 [+]

Database links

Mature vvi-miR172a

Accession MIMAT0005699
Description Vitis vinifera vvi-miR172a mature miRNA
Sequence 80 - UGAAUCUUGAUGAUGCUACAU - 100
Evidence not_experimental

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467