miRBase entry: vvi-MIR390

Stem-loop vvi-MIR390


Accession
MI0006552
Description
Vitis vinifera vvi-MIR390 precursor miRNA
Gene family
MIPF0000101; MIR390

Literature search
4 open access papers mention vvi-MIR390
(19 sentences)

Sequence

15822 reads, 1062 reads per million, 2 experiments
agaaucuguuAAGCUCAGGAGGGAUAGCGCCaugagccaugaugaaaaugauuguugaguugaaaauuuuuucuagcuuguuuuuugggucaucauuuuguguguguggcgcuaucuauccugaguuucacggguucuuc
(((((((((.((((((((((.((((((((((((..((((.(((((...(((((..((((((((((....)))).)))))).......)))))))))).)).))..)))))))))))).)))))))))).)))))))))..

Structure
--         u          G            ga  -  u     aaa     -----gu      -    a 
  agaaucugu AAGCUCAGGA GGAUAGCGCCau  gc ca gauga   ugauu       ugaguu gaaa u
  ||||||||| |||||||||| ||||||||||||  || || |||||   |||||       |||||| ||||  
  ucuugggca uuugaguccu ucuaucgcggug  ug gu uuacu   acugg       guucga cuuu u
cu         c          a            ug  u  u     ---     guuuuuu      u    u 


Annotation confidence Not enough data
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Genome context
chr6: 8159519-8159658 [+]

Database links

Mature vvi-miR390

Accession MIMAT0005707
Description Vitis vinifera vvi-miR390 mature miRNA
Sequence 11 - AAGCUCAGGAGGGAUAGCGCC - 31
Evidence experimental
Array [2], Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558