Stem-loop vvi-MIR393b

Accession

MI0006553

Description

Vitis vinifera vvi-MIR393b precursor miRNA

Gene family

MIPF0000083; MIR393

Literature search

4 open access papers mention vvi-MIR393b
(13 sentences)

Sequence

57 reads, 4 reads per million, 2 experiments

ggaggaggcaUCCAAAGGGAUCGCAUUGAUCccaaacucuccaugucuuuggaucaugcuaucccuuuggauuccuccuuugg
((((((((.((((((((((((.((((.(((((.(((..(.....)..)))))))))))).)))))))))))).))))))))..

Structure

--        c            C    U     c   cu u 
  ggaggagg aUCCAAAGGGAU GCAU GAUCc aaa  c c
  |||||||| |||||||||||| |||| ||||| |||  | c
  uuuccucc uagguuucccua cgua cuagg uuu  g a
gg        u            u    -     -   cu u 

Annotation confidence Not enough data

Genome context

chr13: 4265132-4265214 [+]

Mature vvi-miR393b

• Accession: MIMAT0005708
• Description: Vitis vinifera vvi-miR393b mature miRNA
• Sequence: 11 - UCCAAAGGGAUCGCAUUGAUC - 31
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558