miRBase entry: vvi-MIR394b

Stem-loop vvi-MIR394b


Accession
MI0006555
Description
Vitis vinifera vvi-MIR394b precursor miRNA
Gene family
MIPF0000100; MIR394

Literature search
3 open access papers mention vvi-MIR394b
(12 sentences)

Sequence

29 reads, 2 reads per million, 2 experiments
acagaguuuaUUGGCAUUCUGUCCACCUCCcaucucuugaaaaucucucuuuucucucuguggaggugggcauacugccaaccaagcucuguu
(((((((((.((((((...(((((((((((((......(((((......)))))....)).)))))))))))...))))))..))))))))).

Structure
-         -a      UUC           -  ucucuu     uc 
 acagaguuu  UUGGCA   UGUCCACCUCC ca      gaaaa  u
 |||||||||  ||||||   ||||||||||| ||      |||||   
 ugucucgaa  aaccgu   acggguggagg gu      cuuuu  c
u         cc      cau           u  --cucu     cu 


Annotation confidence Not enough data
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Genome context
chr18: 1413038-1413130 [-]

Database links

Mature vvi-miR394b

Accession MIMAT0005710
Description Vitis vinifera vvi-miR394b mature miRNA
Sequence 11 - UUGGCAUUCUGUCCACCUCC - 30
Evidence not_experimental

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467