miRBase entry: vvi-MIR395k

Stem-loop vvi-MIR395k


Accession
MI0006566
Description
Vitis vinifera vvi-MIR395k precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
6 open access papers mention vvi-MIR395k
(23 sentences)

Sequence

7106 reads, 479 reads per million, 2 experiments
uccccuagaguucccuugaccacuucacuggggaccuucucuaauuauaaugacuuccuaCUGAAGUGUUUGGGGGAACUCcuggugccauu
...((..((((((((((((.(((((((.((((((...((............)).)))))).))))))).))))))))))))..)).......

Structure
----ucc  ua            c       c      ccu  ucuaa 
       cc  gaguucccuuga cacuuca ugggga   uc     u
       ||  |||||||||||| ||||||| ||||||   ||      
       gg  CUCAAGGGGGUU GUGAAGU auccuu   ag     u
uuaccgu  uc            U       C      --c  uaaua 


Annotation confidence Not enough data
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Genome context
chr1: 6536780-6536871 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from vvi-MIR395k
Name Accession Chromosome Start End Strand Confidence




Database links

Mature vvi-miR395k

Accession MIMAT0005721
Description Vitis vinifera vvi-miR395k mature miRNA
Sequence 61 - CUGAAGUGUUUGGGGGAACUC - 81
Evidence experimental
Array [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558