miRBase entry: vvi-MIR399b

Stem-loop vvi-MIR399b


Accession
MI0006574
Description
Vitis vinifera vvi-MIR399b precursor miRNA
Gene family
MIPF0000015; MIR399

Literature search
5 open access papers mention vvi-MIR399b
(12 sentences)

Sequence

89 reads, 6 reads per million, 2 experiments
aucaaucauagggcaccucuuucuuggcaggcacuggcuccuauauaugaauauacauagcuuagcugcaguaaaaagaugugacuUGCCAAAGGAGAGUUGCCCUGugacugcuuc
..((.((((((((((.((((((.(((((((((((..((..(((..((((......))))...)))..))...........))).)))))))).)))))).)))))))))).))....

Structure
--au  a          c      c        -   ---------ug  uc   -ua    aa 
    ca ucauagggca cucuuu uuggcagg cac           gc  cua   uaug  u
    || |||||||||| |||||| |||||||| |||           ||  |||   ||||   
    gu aguGUCCCGU GAGAGG AACCGUuc gug           cg  gau   auac  a
cuuc  c          U      A        a   uagaaaaauga  uc   ucg    au 


Annotation confidence Not enough data
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Genome context
chr16: 15618708-15618824 [-]

Database links

Mature vvi-miR399b

Accession MIMAT0005729
Description Vitis vinifera vvi-miR399b mature miRNA
Sequence 87 - UGCCAAAGGAGAGUUGCCCUG - 107
Evidence experimental
Array [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558