Stem-loop sequence hsa-mir-513b

Accession

MI0006648 (change log)

Symbol

HGNC:MIR513B

Description

Homo sapiens miR-513b stem-loop

Gene family

MIPF0000130; mir-506

Literature search

28 open access papers mention hsa-mir-513b
(198 sentences)

Stem-loop

   --g      g   cu   a          u         gaa 
5'    uguaca ugc  uuc caaggaggug cauuuaugu   c
      |||||| |||  ||| |||||||||| |||||||||    
3'    acaugu aug  gag guuuuuccac guaaauaua   u
   acg      a   ag   a          u         aaa 

Deep sequencing

2880 reads, 24.6 reads per million, 61 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chrX: 147199044-147199127 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from hsa-mir-513b

• hsa-mir-513b: chrX: 147199044-147199127 [-]
• hsa-mir-513c: chrX: 147189704-147189787 [-]

Database links

• EntrezGene:MIR513B
• EntrezGene:MIR513B
• HGNC:MIR513B
• RNAcentral:URS000075C5E7_9606
• miRBase Tracker:MI0006648

Mature sequence hsa-miR-513b-5p

• Accession: MIMAT0005788
• Sequence: 14 - uucacaaggaggugucauuuau - 35
• Deep sequencing: 2827 reads, 59 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS0000284586_9606
• Predicted targets:
  • TargetScanVert:hsa-miR-513b-5p
  • miRDB:hsa-miR-513b-5p
  • microrna.org:hsa-miR-513b-5p

Mature sequence hsa-miR-513b-3p

• Accession: MIMAT0026749
• Sequence: 50 - aaaugucaccuuuuugagagga - 71
• Deep sequencing: 53 reads, 9 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:hsa-miR-513b-3p
  • miRDB:hsa-miR-513b-3p

References

1. PMID:17416744 "Rapid evolution of an X-linked microRNA cluster in primates" Zhang R, Peng Y, Wang W, Su B Genome Res. 17:612-617(2007).
2. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).