miRBase entry: osa-MIR1425

Stem-loop osa-MIR1425


Accession
MI0006965
Description
Oryza sativa osa-MIR1425 precursor miRNA

Literature search
15 open access papers mention osa-MIR1425
(60 sentences)

Sequence

1695 reads, 1196 reads per million, 2 experiments
cuguugacugcauUAGGAUUCAAUCCUUGCUGCUaaauguauugcuuauauucagcaauauaauguucagCAGCAAGAACUGGAUCUUAAUauagucgauag
((((((((((.(((((((((((...(((((((((.(((((((((((.......))))))))...))).)))))))))...))))))))))).))))))))))

Structure
          c           AUC         a   ---        ua 
cuguugacug auUAGGAUUCA   CUUGCUGCU aau   guauugcu  u
|||||||||| |||||||||||   ||||||||| |||   ||||||||  a
gauagcugau UAAUUCUAGGU   GAACGACga uug   uauaacga  u
          a           CAA         c   uaa        cu 


Annotation confidence High
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Genome context
Chr5: 8862149-8862250 [+]

Database links

Mature osa-miR1425-5p

Accession MIMAT0005959
Description Oryza sativa osa-miR1425-5p mature miRNA
Sequence 14 - UAGGAUUCAAUCCUUGCUGCU - 34
Evidence experimental
MPSS [1], Northern [1], cloned [2-3]
Database links

Mature osa-miR1425-3p

Accession MIMAT0020933
Description Oryza sativa osa-miR1425-3p mature miRNA
Sequence 71 - CAGCAAGAACUGGAUCUUAAU - 91
Evidence experimental
Illumina [4]
Database links

References

  1. PubMed ID: 18312648
    Identification of novel and candidate miRNAs in rice by high throughput sequencing
    Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
    BMC Plant Biol (2008) 8:25

  2. PubMed ID: 19055717
    Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice
    Lacombe S, Nagasaki H, Santi C, Duval D, Piégu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M
    BMC Plant Biol (2008) 8:123

  3. PubMed ID: 18353984
    Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
    "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
    "Proc Natl Acad Sci U S A (2008) 105:4951-4956

  4. PubMed ID: 21791435
    Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)
    "Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q"
    "J Exp Bot (2011) 62:4943-4954