miRBase entry: osa-MIR1428a

Stem-loop osa-MIR1428a


Accession
MI0006968
Description
Oryza sativa osa-MIR1428a precursor miRNA
Gene family
MIPF0000575; MIR1428

Literature search
5 open access papers mention osa-MIR1428a
(20 sentences)

Sequence

1 reads, 0 reads per million, 1 experiments
gguuagugCGUUUUGCAAAUUCGCAGGCCcuaucuugugguaugaacugaguacgcgaugauuuauccugcguauugggggcuuaccaUAAGAUAAAGCCGUGAAUUUGcaaaacguuca
.....(.(((((((((((((((((.(((..((((((((((((.(..((.(((((((((((...))))..))))))).))..).))))))))))))..)))))))))))))))))))).).

Structure
gguua u                 A   Cc            u aa  g       --    a 
     g gCGUUUUGCAAAUUCGC GGC  uaucuuguggua g  cu aguacgc  gaug  
     | ||||||||||||||||| |||  |||||||||||| |  || |||||||  |||| u
     c ugcaaaacGUUUAAGUG CCG  AUAGAAUaccau c  gg uuaugcg  cuau  
----a u                 -   AA            u gg  g       uc    u 


Annotation confidence Not enough data
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Genome context
Chr1: 13160777-13160896 [+]

Database links

Mature osa-miR1428a-5p

Accession MIMAT0005962
Description Oryza sativa osa-miR1428a-5p mature miRNA
Sequence 9 - CGUUUUGCAAAUUCGCAGGCC - 29
Evidence experimental
MPSS [1], Northern [1], cloned [2]

Mature osa-miR1428a-3p

Accession MIMAT0007280
Description Oryza sativa osa-miR1428a-3p mature miRNA
Sequence 89 - UAAGAUAAAGCCGUGAAUUUG - 109
Evidence experimental
454 [3]

References

  1. PubMed ID: 18312648
    Identification of novel and candidate miRNAs in rice by high throughput sequencing
    Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
    BMC Plant Biol (2008) 8:25

  2. PubMed ID: 18353984
    Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
    "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
    "Proc Natl Acad Sci U S A (2008) 105:4951-4956

  3. PubMed ID: 18687877
    A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
    "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
    "Genome Res (2008) 18:1456-1465