Stem-loop sequence osa-MIR444b

Accession

MI0006974 (change log)

Description

Oryza sativa miR444b stem-loop

Gene family

MIPF0000402; MIR444

Literature search

25 open access papers mention osa-MIR444b
(67 sentences)

Stem-loop

   -au         u   ga        u               u              ---uuuag    u 
5'    gcaagggga ggu  caagcuug ggcagcaacugcaca cuugcaagaaaauc        gguu u
      ||||||||| |||  |||||||| ||||||||||||||| ||||||||||||||        |||| u
3'    cguuucccu ccg  guucgaac cuguuguugacgugu gaacguucuuuuag        ccag c
   aac         -   uc        u               u              uagccaua    a 

Deep sequencing

3874 reads, 2.25e+03 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

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Database links

• miRBase Tracker:MI0006974

Mature sequence osa-miR444b.2

• Accession: MIMAT0005968
• Sequence: 100 - ugcaguuguugucucaagcuu - 120
• Deep sequencing: 3660 reads, 2 experiments
• Evidence: experimental; MPSS [1], Northern [1]
• Database links:
  • RNAcentral:URS000021A6BC_39947

Mature sequence osa-miR444b.1

• Accession: MIMAT0005969
• Sequence: 106 - uguugucucaagcuugcugcc - 126
• Deep sequencing: 3498 reads, 2 experiments
• Evidence: experimental; MPSS [1], Northern [1]
• Database links:
  • RNAcentral:URS0000590070_39947

References

1. PMID:18353984 "Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)" Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ Proc Natl Acad Sci U S A. 105:4951-4956(2008).