Stem-loop osa-MIR444b

Accession

MI0006974

Description

Oryza sativa osa-MIR444b precursor miRNA

Literature search

25 open access papers mention osa-MIR444b
(68 sentences)

Sequence

3316 reads, 2333 reads per million, 2 experiments

augcaaggggauggugacaagcuuguggcagcaacugcacaucuugcaagaaaaucuuuaggguuuuucagaccauaccgaugauuuucuugcaaguugUGCAGUUGUUGUCUCAAGCUUGCUGCCucccuuugccaa
..(((((((((.((((.((((((((.(((((((((((((((.((((((((((((((.....(((((...)))))........)))))))))))))).))))))))))))))).)))))))).)))))))))))))...

Structure

-au         u    a        u               u              ---uuuag     u 
   gcaagggga ggug caagcuug ggcagcaacugcaca cuugcaagaaaauc        gguuu  
   ||||||||| |||| |||||||| ||||||||||||||| ||||||||||||||        ||||| u
   cguuucccu CCGU GUUCGAAC CUGUUGUUGACGUgu gaacguucuuuuag        ccaga  
aac         -    C        U               u              uagccaua     c 

Annotation confidence Not enough data

Genome context

Unknown

Mature osa-miR444b.2

• Accession: MIMAT0005968
• Description: Oryza sativa osa-miR444b.2 mature miRNA
• Sequence: 100 - UGCAGUUGUUGUCUCAAGCUU - 120
• Evidence: experimental ; MPSS [1], Northern [1]

Mature osa-miR444b.1

• Accession: MIMAT0005969
• Description: Oryza sativa osa-miR444b.1 mature miRNA
• Sequence: 106 - UGUUGUCUCAAGCUUGCUGCC - 126
• Evidence: experimental ; MPSS [1], Northern [1]

References

1. PubMed ID: 18353984
   Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
   "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
   "Proc Natl Acad Sci U S A (2008) 105:4951-4956