Stem-loop gga-mir-551

Accession

MI0006983

Description

Gallus gallus gga-mir-551 precursor miRNA

Literature search

1 open access papers mention gga-mir-551
(1 sentences)

Sequence

116 reads, 2 reads per million, 4 experiments

ccaccagagcugccccauggcuccaGAAAUCAAGGGUGGGUAAGACCUuguaggauaacuggcagGCGACCCAUACUUGGUUUCAGgggcuguguggguaucgucaguggugg
(((((((((.((((((((((((((.(((((((((.((((((..(.(((..(((.....)))..)))).)))))).))))))))).))))))))).))))).).))..))))))

Structure

      --  - c     -         a         G      AA A   ug   g 
ccacca  ga g ugccc cauggcucc GAAAUCAAG GUGGGU  G CCU  uag a
||||||  || | ||||| ||||||||| ||||||||| ||||||  | |||  ||| u
gguggu  cu c auggg gugucgggG CUUUGGUUC UACCCA  C Gga  guc a
      ga  g u     u         A         A      -G -   cg   a 

Annotation confidence Medium

Genome context

chr9: 20500004-20500116 [-]

Mature gga-miR-551-5p

• Accession: MIMAT0007289
• Description: Gallus gallus gga-miR-551-5p mature miRNA
• Sequence: 26 - GAAAUCAAGGGUGGGUAAGACCU - 48
• Evidence: experimental ; cloned [1]

Mature gga-miR-551-3p

• Accession: MIMAT0007290
• Description: Gallus gallus gga-miR-551-3p mature miRNA
• Sequence: 66 - GCGACCCAUACUUGGUUUCAG - 86
• Evidence: experimental ; cloned [1-2], Illumina [3]

References

1. PubMed ID: 18463306
   Conservation of small RNA pathways in platypus
   "Murchison EP, Kheradpour P, Sachidanandam R, Smith C, Hodges E, Xuan Z, Kellis M, Grutzner F, Stark A, Hannon GJ"
   "Genome Res (2008) 18:995-1004


2. PubMed ID: 18511220
   Identification of novel chicken microRNAs and analysis of their genomic organization
   "Shao P, Zhou H, Xiao ZD, He JH, Huang MB, Chen YQ, Qu LH"
   "Gene (2008) 418:34-40


3. PubMed ID: 18469162
   A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
   "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
   "Genome Res (2008) 18:957-964