Stem-loop sequence ptc-MIR171l

Accession

MI0007032 (change log)

Description

Populus trichocarpa miR171l stem-loop

Gene family

MIPF0000104; MIR171_2

Literature search

6 open access papers mention ptc-MIR171l
(11 sentences)

Stem-loop

            g   c  u           c      aucuucugugcauaagcauc 
5' ggagaagua aca gg gugauauuggu cggcuc                    u
   ||||||||| ||| || ||||||||||| ||||||                    g
3' cuucuucgu ugu uc cacuauaacua gccgag                    a
            a   -  u           a      cagaaguacucacuucuuga 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000351.2: 654599-654710 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000079B242_3694
• miRBase Tracker:MI0007032

Mature sequence ptc-miR171l-5p

• Accession: MIMAT0002095
• Sequence: 17 - ugugauauugguccggcucauc - 38
• Evidence: experimental; cloned [1], Northern [1]

Mature sequence ptc-miR171l-3p

• Accession: MIMAT0005994
• Sequence: 78 - cgagccgaaucaauaucacu - 97
• Evidence: experimental; cloned [1]

References

1. PMID:18363789 "Stress-responsive microRNAs in Populus" Lu S, Sun YH, Chiang VL Plant J. 55:131-151(2008).