Stem-loop sequence ptc-MIR1448

Accession

MI0007048 (change log)

Description

Populus trichocarpa miR1448 stem-loop

Gene family

MIPF0000403; MIR482

Literature search

3 open access papers mention ptc-MIR1448
(118 sentences)

Stem-loop

        g           -a     c  u  -u    -    uu 
5' guuac gguaugggagg  uugga ag ac  gcuu gguu  a
   ||||| |||||||||||  ||||| || ||  |||| ||||   
3' uaaug ccauacccucc  aaccu uc ug  ugaa ccaa  a
        g           gc     u  u  uc    a    uu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Poptr2_0; GCA_000002775.2): CM000344.2: 8028236-8028320 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from ptc-MIR1448

• ptc-MIR482a: CM000344.2: 8028049-8028155 [+]
• ptc-MIR1448: CM000344.2: 8028236-8028320 [+]

Database links

• RNAcentral:URS000079C703_3694
• miRBase Tracker:MI0007048

Mature sequence ptc-miR1448

• Accession: MIMAT0006010
• Sequence: 59 - cuuuccaacgccucccauac - 78
• Evidence: experimental; cloned [1]

References

1. PMID:18363789 "Stress-responsive microRNAs in Populus" Lu S, Sun YH, Chiang VL Plant J. 55:131-151(2008).