miRBase entry: gga-mir-460b

Stem-loop gga-mir-460b


Accession
MI0007055
Description
Gallus gallus gga-mir-460b precursor miRNA
Gene family
MIPF0000134; mir-460

Literature search
6 open access papers mention gga-mir-460b
(10 sentences)

Sequence

116696 reads, 1253 reads per million, 5 experiments
cucagaucuggcucuacguugUCCUCAUUGUACAUGCUGUGUGuauuugccacguaCACAGCGCAUGCAAUGUGGACAUaauggagcuca
.........(((((((...(((((.(((((..(((((..(((((((.......)))))))..)))))))))).)))))...)))))))..

Structure
cucagaucu       cgu     U     UA     UG       uu 
         ggcucua   ugUCC CAUUG  CAUGC  UGUGuau  g
         |||||||   ||||| |||||  |||||  |||||||  c
         ucgaggu   ACAGG GUAAC  GUACG  ACACaug  c
-------ac       aaU     U     --     CG       ca 


Annotation confidence High
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Genome context
chr4: 2714081-2714170 [+]

Database links

Mature gga-miR-460b-5p

Accession MIMAT0007326
Description Gallus gallus gga-miR-460b-5p mature miRNA
Sequence 22 - UCCUCAUUGUACAUGCUGUGUG - 43
Evidence experimental
454 [1], Illumina [2]
Database links
Predicted targets

Mature gga-miR-460b-3p

Accession MIMAT0007327
Description Gallus gallus gga-miR-460b-3p mature miRNA
Sequence 57 - CACAGCGCAUGCAAUGUGGACAU - 79
Evidence experimental
454 [1], Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964

  2. PubMed ID: 18430245
    Deep sequencing of chicken microRNAs
    Burnside J, Ouyang M, Anderson A, Bernberg E, Lu C, Meyers BC, Green PJ, Markis M, Isaacs G, Huang E, Morgan RW
    BMC Genomics (2008) 9:185