miRBase entry: odi-mir-1468

Stem-loop odi-mir-1468


Accession
MI0007079
Description
Oikopleura dioica odi-mir-1468 precursor miRNA


Sequence

gaagaugaguaaaauUAAGGCGAGAUGAGGUCUUUGGACAguuaauuaaugaccgaugaccuaccgccucaauuuaacuugcucuaaauucgacagagagauuuu
(((...((((((((((.(((((.(...(((((.((((.((.........)).)))).))))).)))))).))))....))))))....)))..............

Structure
--------------   -gau      ----    A     A AUG     U    A  guu 
              gaa    gaguaa    aauU AGGCG G   AGGUC UUGG CA   a
              |||    ||||||    |||| ||||| |   ||||| |||| ||   a
              cuu    cucguu    uuaa uccgc c   uccag agcc gu   u
uuuuagagagacag   aaau      caau    c     - --a     u    a  aau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature odi-miR-1468

Accession MIMAT0006019
Description Oikopleura dioica odi-miR-1468 mature miRNA
Sequence 16 - UAAGGCGAGAUGAGGUCUUUGGACA - 40
Evidence experimental
cloned [1]

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080