miRBase entry: csa-mir-1497

Stem-loop csa-mir-1497


Accession
MI0007132
Description
Ciona savignyi csa-mir-1497 precursor miRNA
Gene family
MIPF0000458; mir-1497

Literature search
1 open access papers mention csa-mir-1497
(2 sentences)

Sequence

accaucaggcugguauaagcguaaccucuuguaaaucuccaacacuaagcuugguuacagcucugUUGAAGAAUUGCAGGUGGUAGGUgcuauccaugcauua
........(((((.(((.((((.(((.(((((((.(((.(((((...((((.(....))))).))))).))).))))))).)))..)))))))))).))....

Structure
accaucag  -   u   a    -a   u       a   c     cua    u g 
        gc ugg aua gcgu  acc cuuguaa ucu caaca   agcu g u
        || ||| ||| ||||  ||| ||||||| ||| |||||   |||| |  
        cg acc uau cgUG  UGG GGACGUU AGA GUUgu   ucga c u
----auua  u   -   -    GA   U       A   A     --c    - a 


Annotation confidence Not enough data
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Genome context
reftig_55: 1053106-1053208 [-]

Database links

Mature csa-miR-1497

Accession MIMAT0006070
Description Ciona savignyi csa-miR-1497 mature miRNA
Sequence 66 - UUGAAGAAUUGCAGGUGGUAGGU - 88
Evidence not_experimental

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080