miRBase entry: cin-let-7d

Stem-loop cin-let-7d


Accession
MI0007153
Description
Ciona intestinalis cin-let-7d precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
3 open access papers mention cin-let-7d
(18 sentences)

Sequence

1064 reads, 410 reads per million, 2 experiments
ucagcuauucguggcUGAGGUAGUUGGUUGUAUUGUUucccuuguguaauguuaaCUAUACAGCCCGCUAGCUUaaccaugguugcuaacuauccacgaau
..(((...((((((.((((.((((.((((((((.(((................))).)))))))).)))).)))).))))))..)))..............

Structure
------------uc   uau      c    G    U        U   ucccuug 
              agc   ucgugg UGAG UAGU GGUUGUAU GUU       u
              |||   |||||| |||| |||| |||||||| |||        
              ucg   gguacc aUUC AUCG CCGACAUA Caa       g
uaagcaccuaucaa   -uu      a    G    C        U   uuguaau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
10p: 1217625-1217725 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cin-let-7d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-let-7d-5p

Accession MIMAT0006089
Description Ciona intestinalis cin-let-7d-5p mature miRNA
Sequence 16 - UGAGGUAGUUGGUUGUAUUGUU - 37
Evidence experimental
Northern [1], Illumina [3]

Mature cin-let-7d-3p

Accession MIMAT0015250
Description Ciona intestinalis cin-let-7d-3p mature miRNA
Sequence 56 - CUAUACAGCCCGCUAGCUU - 74
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080

  2. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39

  3. PubMed ID: 18047675
    Computational prediction and experimental validation of Ciona intestinalis microRNA genes
    Norden-Krichmar TM, Holtz J, Pasquinelli AE, Gaasterland T
    BMC Genomics (2007) 8:445