miRBase entry: cin-let-7e

Stem-loop cin-let-7e


Accession
MI0007154
Description
Ciona intestinalis cin-let-7e precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
3 open access papers mention cin-let-7e
(18 sentences)

Sequence

4 reads, 3 reads per million, 2 experiments
ucagcuauucguggcUGAGGUAGUUGGUUGUAUCGGUucccuugugaaauguuaacuauacagcccgcuaacuuaaccauugguugcuaacuauccac
.((((((...((((.((((.((((.((((((((.((((..(.........)..)))))))))))).)))).)))).))))))))))............

Structure
-----------u      uuc    c    G    U        C    cc uug 
            cagcua   gugg UGAG UAGU GGUUGUAU GGUu  c   u
            ||||||   |||| |||| |||| |||||||| ||||  |   g
            guuggu   uacc auuc aucg ccgacaua ucaa  g   a
caccuaucaauc      ---    a    a    c        -    uu uaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature cin-let-7e

Accession MIMAT0006090
Description Ciona intestinalis cin-let-7e mature miRNA
Sequence 16 - UGAGGUAGUUGGUUGUAUCGGU - 37
Evidence not_experimental

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080