miRBase entry: cin-mir-92c

Stem-loop cin-mir-92c


Accession
MI0007162
Description
Ciona intestinalis cin-mir-92c precursor miRNA
Gene family
MIPF0000509; mir-92

Literature search
1 open access papers mention cin-mir-92c
(1 sentences)

Sequence

1991 reads, 773 reads per million, 2 experiments
ucccaaacuuauaaacuguaccugcauacuuAGGCCUGGCGAAGUGCAUUGcguugucauggucgUAUUGCACUCGUCCCGGUCUAUguaucugguaaaaa
..................((((.(.((((.((((((.(((((.(((((.((((..........)))).)))))))).)).)))))).))))).))))....

Structure
ucccaaacuuauaaacug    u c    u      U  -   A     U    uugu 
                  uacc g auac uAGGCC GG CGA GUGCA UGcg    c
                  |||| | |||| |||||| || ||| ||||| ||||     
                  augg c uaug AUCUGG CC GCU CACGU AUgc    a
--------------aaaa    u -    U      C  U   -     U    uggu 


Annotation confidence High
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Genome context
3p: 1865219-1865319 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from cin-mir-92c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-92c-5p

Accession MIMAT0015255
Description Ciona intestinalis cin-miR-92c-5p mature miRNA
Sequence 32 - AGGCCUGGCGAAGUGCAUUG - 51
Evidence experimental
Illumina [2]

Mature cin-miR-92c-3p

Accession MIMAT0006098
Description Ciona intestinalis cin-miR-92c-3p mature miRNA
Sequence 66 - UAUUGCACUCGUCCCGGUCUAU - 87
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080

  2. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39