miRBase entry: cin-mir-124-2

Stem-loop cin-mir-124-2


Accession
MI0007165
Description
Ciona intestinalis cin-mir-124-2 precursor miRNA
Gene family
MIPF0000021; mir-124

Literature search
3 open access papers mention cin-mir-124-2
(44 sentences)

Sequence

72651 reads, 31163 reads per million, 2 experiments
cguaauauuuaaagggcgcuuaugaguCGUGUUUACUGUGGACCUUGcugugugacgucacaaUAAGGCACGCGGUGAAUGCCAAucaaaagucgccgc
..............(((((((.(((...((((((((((((..(((((.((((......)))).)))))..))))))))))))...))).))).))))..

Structure
cguaauauuuaaag    -   a   guC            GA     c    ug 
              ggcg cuu uga   GUGUUUACUGUG  CCUUG ugug  a
              |||| ||| |||   ||||||||||||  ||||| ||||   
              ccgc gaa acu   CGUAAGUGGCGC  GGAAU acac  c
------------cg    u   a   AAC            AC     a    ug 


Annotation confidence High
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Genome context
7q: 6301598-6301696 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-124-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-124-3p

Accession MIMAT0006100
Description Ciona intestinalis cin-miR-124-3p mature miRNA
Sequence 64 - UAAGGCACGCGGUGAAUGCCAA - 85
Evidence experimental
Illumina [2]

Mature cin-miR-124-2-5p

Accession MIMAT0015257
Description Ciona intestinalis cin-miR-124-2-5p mature miRNA
Sequence 28 - CGUGUUUACUGUGGACCUUG - 47
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080

  2. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39