Stem-loop cin-mir-141

Accession

MI0007168

Description

Ciona intestinalis cin-mir-141 precursor miRNA

Gene family

MIPF0000019; mir-8

Sequence

6871 reads, 2406 reads per million, 2 experiments

ugguguAUCUUGGUCAUAUAGUGUUGuagauucaugaucUAACACUGUCUGGUAAAGAUGCauucgacgugucuc
.((((((((((..(((.(((((((..((((((...))))))))))))).)))..))))))))))...........

Structure

----------u          GG   U       UG      c 
           gguguAUCUU  UCA AUAGUGU  uagauu  
           ||||||||||  ||| |||||||  |||||| a
           uuaCGUAGAA  GGU UGUCACA  AUcuag  
cucugugcagc          AU   C       --      u 

Annotation confidence High

Genome context

scaffold_71: 128547-128621 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from cin-mir-141

Mature cin-miR-141-5p

• Accession: MIMAT0015260
• Description: Ciona intestinalis cin-miR-141-5p mature miRNA
• Sequence: 7 - AUCUUGGUCAUAUAGUGUUG - 26
• Evidence: experimental ; Illumina [3]

Mature cin-miR-141-3p

• Accession: MIMAT0006103
• Description: Ciona intestinalis cin-miR-141-3p mature miRNA
• Sequence: 40 - UAACACUGUCUGGUAAAGAUGC - 61
• Evidence: experimental ; Northern [1], Illumina [3]

References

1. PubMed ID: 18339653
   Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
   "Fu X, Adamski M, Thompson EM"
   "Mol Biol Evol (2008) 25:1067-1080


2. PubMed ID: 20370911
   miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
   Hendrix D, Levine M, Shi W
   Genome Biol (2010) 11:R39


3. PubMed ID: 18047675
   Computational prediction and experimental validation of Ciona intestinalis microRNA genes
   Norden-Krichmar TM, Holtz J, Pasquinelli AE, Gaasterland T
   BMC Genomics (2007) 8:445