miRBase entry: csa-let-7c-2

Stem-loop csa-let-7c-2


Accession
MI0007184
Description
Ciona savignyi csa-let-7c-2 precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
2 open access papers mention csa-let-7c-2
(14 sentences)

Sequence

cucuugcugauaacaUGAGGUAGUAGGUUAUGCAGUUuggcgacaauauuucguugcaaaggagauaacuguguaacuugcuggcucuuuuaucgacaacuc
...(((.((((((...(((.(((((((((((((((((..(((((........))))).........))))))))))))))))).)))..)))))).)))...

Structure
cuc   c      caU   G                 -------ug     aau 
   uug ugauaa   GAG UAGUAGGUUAUGCAGUU         gcgac   a
   ||| ||||||   ||| |||||||||||||||||         |||||    
   aac gcuauu   cuc gucguucaaugugucaa         cguug   u
cuc   a      -uu   g                 uagaggaaa     cuu 


Annotation confidence Not enough data
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Genome context
reftig_41: 1117496-1117597 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from csa-let-7c-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature csa-let-7c

Accession MIMAT0006118
Description Ciona savignyi csa-let-7c mature miRNA
Sequence 16 - UGAGGUAGUAGGUUAUGCAGUU - 37
Evidence not_experimental

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080