miRBase entry: csa-mir-126

Stem-loop csa-mir-126


Accession
MI0007194
Description
Ciona savignyi csa-mir-126 precursor miRNA
Gene family
MIPF0000115; mir-126

Literature search
2 open access papers mention csa-mir-126
(3 sentences)

Sequence

gugucauaauuaugguuuucgaugcugccuuguuaccuacgguaccagguagaaaguaagucaucUCGUACCGUGAGUAAUAAAGCauucucggaggcuca
.............(((((((((...(((.(((((((.((((((((.((((.((.......)))))).)))))))).))))))).)))...)))))))))..

Structure
gugucauaauuau         ugc   c       c        c    a  aa 
             gguuuucga   ugc uuguuac uacgguac aggu ga  g
             |||||||||   ||| ||||||| |||||||| |||| ||  u
             ucggaggcu   aCG AAUAAUG GUGCCAUG Ucua cu  a
-----------ac         cuu   A       A        C    -  ga 


Annotation confidence Not enough data
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Genome context
reftig_27: 688926-689026 [-]

Database links

Mature csa-miR-126

Accession MIMAT0006127
Description Ciona savignyi csa-miR-126 mature miRNA
Sequence 66 - UCGUACCGUGAGUAAUAAAGC - 86
Evidence not_experimental

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080