miRBase entry: csa-mir-133

Stem-loop csa-mir-133


Accession
MI0007195
Description
Ciona savignyi csa-mir-133 precursor miRNA
Gene family
MIPF0000029; mir-133


Sequence

ugaguaaaaaaaacacugcuugugacgguuguugguaaagaggaucgaaccuggaaaaugaugguUUGGUCCCCUUCAACCAGCUAccgaugcaacgcacg
................(((((((..((((.((((((.(((.((((((((((...........)))))))))).)))..)))))).))))..)))).)))..

Structure
ugaguaaaaaaaacac   -    ga    u      -a   a          ugga 
                ugc uugu  cggu guuggu  aag ggaucgaacc    a
                ||| ||||  |||| ||||||  ||| ||||||||||    a
                acg aacg  gccA CGACCA  UUC CCUGGUUugg    a
--------------gc   c    ua    U      AC   C          uagu 


Annotation confidence Not enough data
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Genome context
reftig_62: 225568-225668 [-]

Database links

Mature csa-miR-133

Accession MIMAT0006128
Description Ciona savignyi csa-miR-133 mature miRNA
Sequence 66 - UUGGUCCCCUUCAACCAGCUA - 86
Evidence not_experimental

References

  1. PubMed ID: 18339653
    Altered miRNA repertoire in the simplified chordate, Oikopleura dioica
    "Fu X, Adamski M, Thompson EM"
    "Mol Biol Evol (2008) 25:1067-1080