Stem-loop sequence gma-MIR159c

Accession

MI0007207 (change log)

Description

Glycine max miR159c stem-loop

Gene family

MIPF0000010; MIR159

Literature search

23 open access papers mention gma-MIR159c
(80 sentences)

Stem-loop

   ---a  c  g            a        gu        ag   c     a    ug  gcu        guu    u   -a    g  aag 
5'     cc aa uuggagcucucu cacuccaa  cugaagga  uga gguag cccu  cu   aauucaug   accu ugg  uuca au   g
       || || |||||||||||| ||||||||  ||||||||  ||| ||||| ||||  ||   ||||||||   |||| |||  |||| ||    
3'     gg uu agccucgaggga gugagguu  gauuuucu  guu ccauc gggg  ga   uuaaguac   uggg acu  aagu ua   a
   uucc  a  a            a        au        -a   -     -    ca  agu        guc    u   ga    g  cga 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr16: 2830034-2830218 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gma-MIR159c

• gma-MIR156aa: chr16: 2833375-2833561 [-]
• gma-MIR159c: chr16: 2830034-2830218 [-]

Database links

• miRBase Tracker:MI0007207

Mature sequence gma-miR159c

• Accession: MIMAT0007352
• Sequence: 154 - auuggagugaagggagcuccg - 174
• Evidence: experimental; 454 [1], Northern [1]

References

1. PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots" Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O BMC Genomics. 9:160(2008).