miRBase entry: gma-MIR159c

Stem-loop gma-MIR159c


Accession
MI0007207
Description
Glycine max gma-MIR159c precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
23 open access papers mention gma-MIR159c
(80 sentences)

Sequence

acccaaguuggagcucucuacacuccaagucugaaggaagugacgguagacccuugcugcuaauucaugguuaccuuuggauucagauaaggaagcaugugaaagucaugggucugcaugaauuugaagacggggcuaccuugaucuuuuaguAUUGGAGUGAAGGGAGCUCCGaauuaggccuu
.((.((.((((((((((((.((((((((..((((((((..(.(.(((((.((((..((...((((((((...((((.(((.((((.((........)).))))..))).))))...))))))))...))..))))))))).).)))))))))..)))))))).)))))))))))).)).))....

Structure
---a  c  g            a        gu        ag g c     a    ug  gcu        guu    u   -a    g  aag 
    cc aa uuggagcucucu cacuccaa  cugaagga  u a gguag cccu  cu   aauucaug   accu ugg  uuca au   g
    || || |||||||||||| ||||||||  ||||||||  | | ||||| ||||  ||   ||||||||   |||| |||  |||| ||    
    gg uu aGCCUCGAGGGA GUGAGGUU  gauuuucu  a u ccauc gggg  ga   uuaaguac   uggg acu  aagu ua   a
uucc  a  a            A        Au        -- g u     -    ca  agu        guc    u   ga    g  cga 


Annotation confidence Not enough data
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Genome context
chr16: 2830034-2830218 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR159c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR159c

Accession MIMAT0007352
Description Glycine max gma-miR159c mature miRNA
Sequence 154 - AUUGGAGUGAAGGGAGCUCCG - 174
Evidence experimental
454 [1], Northern [1]

References

  1. PubMed ID: 18402695
    Novel and nodulation-regulated microRNAs in soybean roots
    Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
    BMC Genomics (2008) 9:160