Stem-loop gma-MIR169b

Accession

MI0007211

Description

Glycine max gma-MIR169b precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

23 open access papers mention gma-MIR169b
(102 sentences)

Sequence

uaugaugcugCAGCCAAGGAUGACUUGCCGAuaaauucuuucucuaauuugacuuucaauucauguuugucaauugauagugcauuaguucuaauauaugcauuugauuauauagaacacuauugugaaagugucuuuagggauaggguaaauucggcaagucaucuuuggcuacaugucuau
...((((.((.((((((((((((((((((((...(((((.(((((((....(((((((....(((((((((....))))).))))..((((((.((((..(....)..)))))))))).......)))))))....))))))).)))))....)))))))))))))))))))).))))))...

Structure

uau    c  C                    -uaa     u       uuug       auucauguuugucaauugauagugcauua      a    ug a 
   gaug ug AGCCAAGGAUGACUUGCCGA    auucu ucucuaa    acuuuca                             guucua uaua  c u
   |||| || ||||||||||||||||||||    ||||| |||||||    |||||||                             |||||| ||||  |  
   cugu ac ucgguuucuacugaacggcu    uggga agggauu    ugaaagu                             caagau auau  g u
uau    -  a                    uaaa     u       ucug       ----------------------guuauca      -    ua u 

Annotation confidence Not enough data

Genome context

chr2: 10504688-10504870 [+]

Mature gma-miR169b

• Accession: MIMAT0007356
• Description: Glycine max gma-miR169b mature miRNA
• Sequence: 11 - CAGCCAAGGAUGACUUGCCGA - 31
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160