miRBase entry: gma-MIR171a

Stem-loop gma-MIR171a


Accession
MI0007213
Description
Glycine max gma-MIR171a precursor miRNA
Gene family
MIPF0000030; MIR171_1

Literature search
16 open access papers mention gma-MIR171a
(40 sentences)

Sequence

guucaacgggauauugguccgguucaauaagaaagcaaugcucaaaauguuuuuggguccuguuuuuucauUGAGCCGUGCCAAUAUCACGAaccacugcuc
((((.....(((((((((.(((((((((.((((((((..((((((((...))))))))..)))))))).))))))))).)))))))))..))))........

Structure
--------    aacgg         c         a        au        u 
        guuc     gauauuggu cgguucaau agaaagca  gcucaaaa  
        ||||     ||||||||| ||||||||| ||||||||  |||||||| g
        caAG     CUAUAACCG GCCGAGUua uuuuuugu  uggguuuu  
cucgucac    ---CA         U         c        cc        u 


Annotation confidence Not enough data
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Genome context
chr12: 8478656-8478757 [+]

Database links

Mature gma-miR171a

Accession MIMAT0007358
Description Glycine max gma-miR171a mature miRNA
Sequence 72 - UGAGCCGUGCCAAUAUCACGA - 92
Evidence experimental
454 [1-2], SOLiD [3]

References

  1. PubMed ID: 18402695
    Novel and nodulation-regulated microRNAs in soybean roots
    Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
    BMC Genomics (2008) 9:160

  2. PubMed ID: 21504877
    MicroRNAs in the shoot apical meristem of soybean
    "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
    "J Exp Bot (2011) 62:2495-2506

  3. PubMed ID: 21751852
    Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
    "Radwan O, Liu Y, Clough SJ"
    "Mol Plant Microbe Interact (2011) 24:958-972