Stem-loop sequence gma-MIR390a

Accession

MI0007214 (change log)

Description

Glycine max miR390a stem-loop

Gene family

MIPF0000101; MIR390

Literature search

21 open access papers mention gma-MIR390a
(83 sentences)

Stem-loop

   ---------    u    a          g         cau   u    uucucu 
5'          agaa cugu aagcucagga ggauagcgc   gga gauc      u
            |||| |||| |||||||||| |||||||||   ||| ||||       
3'          ucuu ggua uuugaguccu ccuaucgcg   ucu cuag      c
   acacuucua    c    c          a         uuc   u    uucuca 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr3: 6398854-6398958 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0007214

Mature sequence gma-miR390a-5p

• Accession: MIMAT0007359
• Sequence: 11 - aagcucaggagggauagcgcc - 31
• Evidence: experimental; 454 [1]

Mature sequence gma-miR390a-3p

• Accession: MIMAT0007360
• Sequence: 68 - cgcuauccauccugaguuuc - 87
• Evidence: experimental; 454 [1]

References

1. PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots" Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O BMC Genomics. 9:160(2008).