miRBase entry: gma-MIR393a

Stem-loop gma-MIR393a


Accession
MI0007216
Description
Glycine max gma-MIR393a precursor miRNA
Gene family
MIPF0000083; MIR393

Literature search
22 open access papers mention gma-MIR393a
(55 sentences)

Sequence

ggaggaggcaUCCAAAGGGAUCGCAUUGAUCccaaauccaagcuucaauauucuucucucuuucccacucaaaauauuaauuuuauuugggaucaugcuaucccuuuggauuucuccuuu
.(((((((.((((((((((((.((((.((((((((((..(((.((.((((((....................)))))))).))))))))))))))))).)))))))))))).))))))).

Structure
g       c            C    U          cc   c  c      cuucucucu 
 gaggagg aUCCAAAGGGAU GCAU GAUCccaaau  aag uu aauauu         u
 ||||||| |||||||||||| |||| ||||||||||  ||| || ||||||          
 uuccucu uagguuucccua cgua cuaggguuua  uuu aa uuauaa         u
u       u            u    -          --   u  -      aacucaccc 


Annotation confidence Not enough data
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Genome context
chr11: 32101395-32101514 [+]

Database links

Mature gma-miR393a

Accession MIMAT0007362
Description Glycine max gma-miR393a mature miRNA
Sequence 11 - UCCAAAGGGAUCGCAUUGAUC - 31
Evidence experimental
454 [1], Northern [1]

References

  1. PubMed ID: 18402695
    Novel and nodulation-regulated microRNAs in soybean roots
    Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
    BMC Genomics (2008) 9:160