Stem-loop gma-MIR1516a

Accession

MI0007229

Description

Glycine max gma-MIR1516a precursor miRNA

Literature search

2 open access papers mention gma-MIR1516a
(2 sentences)

Sequence

16540 reads, 54.0 reads per million, 173 experiments

cauguUUGGAUACAAGUUAUAAGCUCUUuugagagcuucucuacagaaaauauauuauauauuuccgguagagaagcuCUCAAAAGAGCUUAUGGCUUGuauccaaacaga
..((((((((((((((((((((((((((((((((((((((((((.(.(((((((...))))))).).))))))))))))))))))))))))))))))))))))))))))..

Structure

ca                                          a a       u 
  uguUUGGAUACAAGUUAUAAGCUCUUuugagagcuucucuac g aaauaua  
  |||||||||||||||||||||||||||||||||||||||||| | ||||||| u
  acaaaccuauGUUCGGUAUUCGAGAAAACUCucgaagagaug c uuuauau  
ag                                          g c       a 

Annotation confidence Medium

Genome context

chr3: 45034824-45034934 [+]

Mature gma-miR1516a-5p

• Accession: MIMAT0020937
• Description: Glycine max gma-miR1516a-5p mature miRNA
• Sequence: 6 - UUGGAUACAAGUUAUAAGCUCUU - 28
• Evidence: experimental ; SOLiD [2]

Mature gma-miR1516a-3p

• Accession: MIMAT0007375
• Description: Glycine max gma-miR1516a-3p mature miRNA
• Sequence: 79 - CUCAAAAGAGCUUAUGGCUUG - 99
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160


2. PubMed ID: 21751852
   Transcriptional analysis of soybean root response to Fusarium virguliforme, the causal agent of sudden death syndrome
   "Radwan O, Liu Y, Clough SJ"
   "Mol Plant Microbe Interact (2011) 24:958-972