miRBase entry: gma-MIR1519

Stem-loop gma-MIR1519


Accession
MI0007232
Description
Glycine max gma-MIR1519 precursor miRNA


Sequence

uaucuuuacaUAAGUGUUGCAAAAUAGUCAUUccguuaaauuuuaaaguaacaccguuagugagaucaauuuuagugccacgugaacuauccaauauagcacuaaaggaugacgugacaugacauguggacgugucuccuaaaagaugucacgucauuuugaaaguccacgagacauuucacaaccuuugcaaugcauggacacuuuaagcacgauuucugacaucuuuuaaguuagagacuauuuugcaauacuuaugcaaaagau
.((((((.(((((((((((((((((((((....(((.....((((((((..(((.....)))........((((((((....((.......)).....))))))))((((((((((((((((((((....)))))).........))))))))))))))((((((((.....))).)))))...((..(((...))).))..)))))))).)))...((((((.........)))))))))))))))))))))))))))..))))))

Structure
u      -a                     --------------------AUUc   uaaau        aacaccguuagugagaucaauuuuagugccacgugaacuauccaauauagcacuaaa              ---------      u 
 aucuuu  caUAAGUGUUGCAAAAUAGUC                        cgu     uuuaaagu                                                         ggaugacgugacau         gacaug g
 ||||||  |||||||||||||||||||||                        |||     ||||||||                                                         ||||||||||||||         ||||||  
 uagaaa  guauucauaacguuuuaucag                        gca     gaauuuca                                                         uuuacugcacugua         cugugc g
-      ac                     agauugaauuuucuacagucuuua   ----c        --------------cagguacguaacguuuccaacacuuuacagagcaccugaaagu              gaaaauccu      a 


Annotation confidence Not enough data
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Genome context
chr7: 11379900-11380166 [+]

Database links

Mature gma-miR1519

Accession MIMAT0007378
Description Glycine max gma-miR1519 mature miRNA
Sequence 11 - UAAGUGUUGCAAAAUAGUCAUU - 32
Evidence experimental
454 [1]

References

  1. PubMed ID: 18402695
    Novel and nodulation-regulated microRNAs in soybean roots
    Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
    BMC Genomics (2008) 9:160