miRBase entry: gma-MIR1533

Stem-loop gma-MIR1533


Accession
MI0007253
Description
Glycine max gma-MIR1533 precursor miRNA

Literature search
1 open access papers mention gma-MIR1533
(1 sentences)

Sequence

uguaaauuauucauauguuauuauuauuauugucacuaucaucaucaccuuuauuacuaucaccaucaccaucauugucucuaucaaugauaguggccaugaucaauaaugAUAAUAAAAAUAAUAAUGAuacuaauggu
.....((((((..((((((((((((.(((((((((...............(((((...((((...((((.(((((((.......))))))).))))...)))).)))))))))))))).))))))))).)))..))))))

Structure
uguaa      ca   -         a         cuaucaucaucaccu     acu    cca    c       uc 
     auuauu  uau guuauuauu uuauuguca               uuauu   auca   ucac aucauug  u
     ||||||  ||| ||||||||| |||||||||               |||||   ||||   |||| |||||||  c
     ugguaa  auA UAAUAAUAA AAUAAUAgu               aauaa   uagu   ggug uaguaac  u
-----      uc   G         A         ---------------     --c    acc    a       ua 


Annotation confidence Not enough data
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Genome context
chr20: 47549866-47550005 [-]

Database links

Mature gma-miR1533

Accession MIMAT0007396
Description Glycine max gma-miR1533 mature miRNA
Sequence 112 - AUAAUAAAAAUAAUAAUGA - 130
Evidence experimental
454 [1]

References

  1. PubMed ID: 18402695
    Novel and nodulation-regulated microRNAs in soybean roots
    Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
    BMC Genomics (2008) 9:160