Stem-loop gma-MIR1534

Accession

MI0007254

Description

Glycine max gma-MIR1534 precursor miRNA

Sequence

gauuaaauuaUAUUUUGGGUAAAUAGUCAUuuucaucccugaauguguagagcgcuaacaaauucguccuuaaaugugucacauaggcuuuuucauuaacgguaacaaauggacagauuugucgcauuuuuuucacuuuuagagacuaaaauuugaauuuuuaucuuucggagacgaauuuauuagugcucugcacauucaaggacaaaaaugauuauuuacccuuuaaaauaaguuuggcau
(.(((((((.(((((((((((((((((((((((..(((.(((((((((((((((((((.((((((((((((((((.((((.(((..(((.((.....)).))).....))))))).)))))...................(((((..(((((....)))))..))))).)).))))))))).))))))))))))))))))).)))..)))))))))))))))))...))))))))))))))..

Structure

-- a       a      ---                 ca   c                   c         -  ------------------------------------------------     g    a   ---ag   u  u 
  g uuaaauu UAUUUU   GGGUAAAUAGUCAUuuu  ucc ugaauguguagagcgcuaa aaauucguc cu                                                uaaau uguc cau     gcu uu c
  | ||||||| ||||||   |||||||||||||||||  ||| ||||||||||||||||||| ||||||||| ||                                                ||||| |||| |||     ||| || a
  c gguuuga auaaaa   cccauuuauuaguaaaa  agg acuuacacgucucgugauu uuuaagcag gg                                                guuua acag gua     ugg aa u
ua -       -      uuu                 ac   a                   a         a  cuuucuauuuuuaaguuuaaaaucagagauuuucacuuuuuuuacgcu     g    -   aacaa   c  u 

Annotation confidence Not enough data

Genome context

chr6: 37671785-37672027 [-]

Mature gma-miR1534

• Accession: MIMAT0007397
• Description: Glycine max gma-miR1534 mature miRNA
• Sequence: 11 - UAUUUUGGGUAAAUAGUCAU - 30
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160