miRBase entry: mdo-mir-340

Stem-loop mdo-mir-340


Accession
MI0007268
Description
Monodelphis domestica mdo-mir-340 precursor miRNA


Sequence

28344 reads, 456 reads per million, 5 experiments
uggacggugaucaaggugugacuauaAAGUAAUGAGAUUGAUUUCUGUgguauaguaaauGGAAAUCAGUUUCAUUACCUUAcagucacaucuaaucuucu
.....((.(((..((((((((((.(((.((((((((((((((((((((..........)))))))))))))))))))).))).)))))))))).))).)).

Structure
uggac  u   ca          a   A                    ggua 
     gg gau  aggugugacu uaA GUAAUGAGAUUGAUUUCUGU    u
     || |||  |||||||||| ||| ||||||||||||||||||||     
     cu cua  ucuacacuga AUU CAUUACUUUGACUAAAGGua    a
----u  u   -a          c   C                    aaug 


Annotation confidence High
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Comments
This sequence is referred to by the unofficial identifier Mdo-182 in [1].

Genome context
chr1: 72640994-72641094 [+]

Database links

Mature mdo-miR-340-5p

Accession MIMAT0006143
Description Monodelphis domestica mdo-miR-340-5p mature miRNA
Sequence 27 - AAGUAAUGAGAUUGAUUUCUGU - 48
Evidence experimental
cloned [1], Illumina [2]

Mature mdo-miR-340-3p

Accession MIMAT0026767
Description Monodelphis domestica mdo-miR-340-3p mature miRNA
Sequence 61 - GGAAAUCAGUUUCAUUACCUUA - 82
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45