miRBase entry: mdo-mir-1547

Stem-loop mdo-mir-1547


Accession
MI0007272
Description
Monodelphis domestica mdo-mir-1547 precursor miRNA


Sequence

164134 reads, 2966 reads per million, 5 experiments
uaaagaacguaugaugUAUCAGAGUCUUGGGUCCUUGUguagaugcuuugagacuuCAAGGAUCCCUGACUUGAUCAUuguggguucuccc
...(((((.(((((((.((((.((((..(((((((((.((............))..)))))))))..))))))))))))))).)))))...

Structure
uaa     g       U    G    UU         -U  agaug 
   agaac uaugaug AUCA AGUC  GGGUCCUUG  gu     c
   ||||| ||||||| |||| ||||  |||||||||  ||      
   ucuug guguUAC UAGU UCAG  CCUAGGAAC  ca     u
ccc     g       -    -    UC         uu  gaguu 


Annotation confidence High
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Comments
This sequence is referred to by the unofficial identifier Mdo-302 in [1].

Genome context
chr4: 335163695-335163785 [-]

Database links

Mature mdo-miR-1547-5p

Accession MIMAT0006147
Description Monodelphis domestica mdo-miR-1547-5p mature miRNA
Sequence 17 - UAUCAGAGUCUUGGGUCCUUGU - 38
Evidence experimental
cloned [1], Illumina [2]
Database links
Predicted targets

Mature mdo-miR-1547-3p

Accession MIMAT0026771
Description Monodelphis domestica mdo-miR-1547-3p mature miRNA
Sequence 57 - CAAGGAUCCCUGACUUGAUCAU - 78
Evidence experimental
Illumina [2]
Database links
Predicted targets

References

  1. PubMed ID: 17965199
    In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
    "Devor EJ, Samollow PB"
    "J Hered (2008) 99:66-72

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45