miRBase entry: gga-mir-1555

Stem-loop gga-mir-1555


Accession
MI0007280
Description
Gallus gallus gga-mir-1555 precursor miRNA

Literature search
1 open access papers mention gga-mir-1555
(2 sentences)

Sequence

156 reads, 2 reads per million, 5 experiments
gaaggugugaagucAGCAAACCCUUCACCCUGCCguguucccuucaugccaggCAGGGUUAUUGGUUUUGUGUGAcaucgcaucuc
..((((((((.(((((((((.((...((((((((..((.........))..))))))))....)).))))).)))).)))))))).

Structure
ga        a    -     C  -UUC        gu  ucc 
  agguguga gucA GCAAA CC    ACCCUGCC  gu   c
  |||||||| |||| ||||| ||    ||||||||  ||   u
  ucuacgcu cAGU UGUUU GG    UGGGACgg  cg   u
-c        a    G     U  UUAU        ac  uac 


Annotation confidence Not enough data
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Genome context
chr1: 144936070-144936155 [-]

Database links

Mature gga-miR-1555-3p

Accession MIMAT0007412
Description Gallus gallus gga-miR-1555-3p mature miRNA
Sequence 54 - CAGGGUUAUUGGUUUUGUGUGA - 75
Evidence experimental
Illumina [1-2]

Mature gga-miR-1555-5p

Accession MIMAT0026774
Description Gallus gallus gga-miR-1555-5p mature miRNA
Sequence 15 - AGCAAACCCUUCACCCUGCC - 34
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45