miRBase entry: gga-mir-1562

Stem-loop gga-mir-1562


Accession
MI0007287
Description
Gallus gallus gga-mir-1562 precursor miRNA

Literature search
1 open access papers mention gga-mir-1562
(7 sentences)

Sequence

1 reads, 0 reads per million, 1 experiments
aucaacaagcggggugcagcuGCACUGUAGAUGGAGGGGCUGCaugaagguggauaguuucUGUGCCCCGUGUAUGCAGUGCAggugcucacugcacuuggu
.....((((.(.((((((.((((((((((....(.(((((.(((.((((........)))))))))))).)...)))))))))).)))..))).).))))..

Structure
aucaa    c g   --   g          GAUG A     U   u    gug 
     caag g ggu  gca cuGCACUGUA    G GGGGC GCa gaag   g
     |||| | |||  ||| ||||||||||    | ||||| ||| ||||    
     guuc c uca  cgu gACGUGACGU    U CCCCG UGU cuuu   a
---ug    a g   cu   g          -AUG G     -   -    gau 


Annotation confidence Not enough data
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Genome context
chr8: 24243083-24243184 [+]

Database links

Mature gga-miR-1562-5p

Accession MIMAT0007420
Description Gallus gallus gga-miR-1562-5p mature miRNA
Sequence 22 - GCACUGUAGAUGGAGGGGCUGC - 43
Evidence experimental
Illumina [1]

Mature gga-miR-1562-3p

Accession MIMAT0007421
Description Gallus gallus gga-miR-1562-3p mature miRNA
Sequence 62 - UGUGCCCCGUGUAUGCAGUGCA - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964