Stem-loop sequence gga-mir-1583

Accession

MI0007309 (change log)

Description

Gallus gallus miR-1583 stem-loop

Stem-loop

   u      -    agg      g   --c  u               -   g 
5'  cgcugg gcgg   gcgcgg ucg   cu ccgucccgcggcucu cgg c
    |||||| ||||   |||||| |||   || ||||||||||||||| |||  
3'  gcggcc ugcc   cgugcc agc   ga ggcagggugccggga gcc g
   g      g    --g      g   cuc  c               u   g 

Deep sequencing

14 reads, 0 reads per million, 5 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chrZ: 70734341-70734438 [+]
• Overlapping transcripts:

  sense

  ENSGALT00000044607 ; XPA-201; intron 4

Clustered miRNAs

< 10kb from gga-mir-1583

• gga-mir-2954: chrZ: 70733043-70733110 [+]
• gga-mir-1583: chrZ: 70734341-70734438 [+]
• gga-mir-2131: chrZ: 70743817-70743905 [-]

Database links

• EntrezGene:MIR1583
• miRBase Tracker:MI0007309

Mature sequence gga-miR-1583

• Accession: MIMAT0007444
• Sequence: 52 - cguagggccgugggacggca - 71
• Deep sequencing: 11 reads, 5 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1583
  • miRDB:gga-miR-1583

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).