miRBase entry: gga-mir-1623

Stem-loop gga-mir-1623


Accession
MI0007352
Description
Gallus gallus gga-mir-1623 precursor miRNA

Literature search
3 open access papers mention gga-mir-1623
(4 sentences)

Sequence

5 reads, 1 reads per million, 3 experiments
gagcaugaaggcauagcacggauGCAGGCACAGACAGGCAGUAcugcagagaugcaaccucugccuacuaaccucaagugaaaguaccuccugcuc
(((((.((.((.....(((...((.(((...((..((((((...((((....))))....)))))).))..))))).)))......)))).)))))

Structure
     u  a  -cauag   gga  C   CAC  AC      -UAc    g 
gagca ga gg      cac   uG AGG   AG  AGGCAG    ugca a
||||| || ||      |||   || |||   ||  ||||||    ||||  
cucgu cu cc      gug   ac ucc   uc  uccguc    acgu g
     c  -  augaaa   --a  -   -aa  -a      ucca    a 


Annotation confidence Not enough data
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Genome context
chr10: 1942149-1942244 [+]

Database links

Mature gga-miR-1623

Accession MIMAT0007491
Description Gallus gallus gga-miR-1623 mature miRNA
Sequence 24 - GCAGGCACAGACAGGCAGUA - 43
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964