miRBase entry: gga-mir-1668

Stem-loop gga-mir-1668


Accession
MI0007402
Description
Gallus gallus gga-mir-1668 precursor miRNA

Literature search
3 open access papers mention gga-mir-1668
(10 sentences)

Sequence

2 reads, 0 reads per million, 2 experiments
gagggcugcccugcagGUGGGCUGGGAGCACAGGCACUgugggcuucguguggUGCUGUGUCCUCACUCACCUUcauggcuugcagaauc
....((.(((.((.(((((((.((((.((((((.((((....((.....)))))))))))).))))))))))).)).)))..))......

Structure
--gagg  -u   c  c       C    A      G    gugg  u 
      gc  gcc ug agGUGGG UGGG GCACAG CACU    gc u
      ||  ||| || ||||||| |||| |||||| ||||    || c
      cg  cgg ac UCCACUC ACUC UGUGUC GUgg    ug g
cuaaga  uu   u  U       -    C      -    ----  u 


Annotation confidence Not enough data
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Comments
This sequence does not map exactly to the galGal4.0 chicken genome assembly, but is annotated based on a Trace Achive sequence (rul06e06.b1).

Genome context
chr33: 217270-217359 [-]

Database links

Mature gga-miR-1668-5p

Accession MIMAT0007551
Description Gallus gallus gga-miR-1668-5p mature miRNA
Sequence 17 - GUGGGCUGGGAGCACAGGCACU - 38
Evidence experimental
Illumina [1]

Mature gga-miR-1668-3p

Accession MIMAT0007552
Description Gallus gallus gga-miR-1668-3p mature miRNA
Sequence 54 - UGCUGUGUCCUCACUCACCUU - 74
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 18469162
    A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach
    "Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML"
    "Genome Res (2008) 18:957-964