Stem-loop sequence gga-mir-1773

Accession

MI0007516 (change log)

Description

Gallus gallus miR-1773 stem-loop

Literature search

1 open access papers mention gga-mir-1773
(1 sentences)

Stem-loop

   caac     c ug     g  gg a     g   --u  c 
5'     cucug u  gggga ga  g ccucu cuu   gc a
       ||||| |  ||||| ||  | ||||| |||   || g
3'     gggac g  ccccu uu  c ggaga gag   cg g
   -gua     a gu     g  -a -     g   uuu  u 

Deep sequencing

6 reads, 0 reads per million, 3 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr20: 8317045-8317122 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-1773

• gga-mir-1a-1: chr20: 8315740-8315810 [+]
• gga-mir-1773: chr20: 8317045-8317122 [+]
• gga-mir-133a-2: chr20: 8326963-8327058 [+]

Database links

• EntrezGene:MIR1773
• miRBase Tracker:MI0007516

Mature sequence gga-miR-1773-5p

• Accession: MIMAT0007683
• Previous IDs: gga-miR-1773*
• Sequence: 12 - ugggggaggagggaccucugcuu - 34
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1773-5p
  • miRDB:gga-miR-1773-5p

Mature sequence gga-miR-1773-3p

• Accession: MIMAT0007684
• Previous IDs: gga-miR-1773
• Sequence: 50 - ggagaggcauuguccccugga - 70
• Deep sequencing: 4 reads, 2 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:gga-miR-1773-3p
  • miRDB:gga-miR-1773-3p

References

1. PMID:18469162 "A microRNA catalog of the developing chicken embryo identified by a deep sequencing approach" Glazov EA, Cottee PA, Barris WC, Moore RJ, Dalrymple BP, Tizard ML Genome Res. 18:957-964(2008).